If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ), 'gf_id' => 'HOM05D000625', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000625' ), 'data_identifier' => 'HOM05D000625', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000625', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '914', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p02350' => 'bna', 'A06p17740' => 'bna', 'A07p09990' => 'bna', 'A07p14970' => 'bna', 'A07p40710' => 'bna', 'A07p40890' => 'bna', 'A07p42880' => 'bna', 'A08p14970' => 'bna', 'A08p24540' => 'bna', 'A09p36210' => 'bna', 'Aa31LG4G5300' => 'aar', 'Aa31LG4G5530' => 'aar', 'Aa31LG6G13300' => 'aar', 'Aa31LG6G5480' => 'aar', 'Aa31LG7G5640' => 'aar', 'Aa31sc249G60' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_362.543' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.2337' => 'aag', 'Actinidia07465' => 'ach', 'Actinidia11649' => 'ach', 'Actinidia13444' => 'ach', 'Actinidia15308' => 'ach', 'Actinidia15309' => 'ach', 'Actinidia15346' => 'ach', 'Actinidia15347' => 'ach', 'Actinidia16035' => 'ach', 'Actinidia16036' => 'ach', 'Actinidia16037' => 'ach', 'Actinidia16038' => 'ach', 'Actinidia19937' => 'ach', 'Actinidia22562' => 'ach', 'Actinidia23136' => 'ach', 'Actinidia23137' => 'ach', 'Actinidia23814' => 'ach', 'Actinidia29483' => 'ach', 'Actinidia34520' => 'ach', 'Actinidia36573' => 'ach', 'Ah.02g125030' => 'amhyb', 'Ah.03g141090' => 'amhyb', 'Ah.04g157720' => 'amhyb', 'Ah.06g191140' => 'amhyb', 'Ah.11g040750' => 'amhyb', 'Ah.11g043260' => 'amhyb', 'AL1G34820' => 'aly', 'AL1G44230' => 'aly', 'AL2G34990' => 'aly', 'AL2G35240' => 'aly', 'AL7G14550' => 'aly', 'AL9U11820' => 'aly', 'AL9U11880' => 'aly', 'Aqoxy1G01660' => 'aox', 'Aqoxy2G04190' => 'aox', 'Aqoxy2G04191' => 'aox', 'Aqoxy4G01899' => 'aox', 'Aqoxy5G01685' => 'aox', 'Aqoxy6G00331' => 'aox', 'Aqoxy6G01152' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1U7IT4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3HMZ7U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.50NPJN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9VM2YS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATF0F7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FF7LJT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G0QL0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIVS0W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.J3VXKJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K3K33Q' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M6K5A0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N24ETT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RJ5V20' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T0GB9L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UJCE1N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VBXL1Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W1K5LL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W5QJNA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WBP6BL' => 'arhy', 'AT1G21660' => 'ath', 'AT1G30280' => 'ath', 'AT1G75100' => 'ath', 'AT1G75310' => 'ath', 'AT4G12770' => 'ath', 'AT4G12780' => 'ath', 'AT4G36520' => 'ath', 'ATR0568G166' => 'atr', 'ATR0661G133' => 'atr', 'ATR0661G295' => 'atr', 'ATR0661G307' => 'atr', 'ATR0661G402' => 'atr', 'ATR0733G170' => 'atr', 'ATR1098G052' => 'atr', 'Atru.chr10.1090' => 'acertr', 'Atru.chr10.1091' => 'acertr', 'Atru.chr13.1547' => 'acertr', 'Atru.chr13.440' => 'acertr', 'Atru.chr13.521_Atru.chr13.522' => 'acertr', 'Atru.chr13.527_Atru.chr13.528' => 'acertr', 'Atru.chr3.621' => 'acertr', 'Atru.chr3.622' => 'acertr', 'Atru.chr6.3474' => 'acertr', 'AUR62000529' => 'cqu', 'AUR62002681' => 'cqu', 'AUR62004083' => 'cqu', 'AUR62006876' => 'cqu', 'AUR62007594' => 'cqu', 'AUR62007723' => 'cqu', 'AUR62013419' => 'cqu', 'AUR62013822' => 'cqu', 'AUR62030136' => 'cqu', 'AUR62033850' => 'cqu', 'AUR62036900' => 'cqu', 'AUR62041683' => 'cqu', 'BcaB02g06992' => 'bca', 'BcaB02g08218' => 'bca', 'BcaB02g08260' => 'bca', 'BcaB03g12207' => 'bca', 'BcaB03g13837' => 'bca', 'BcaB03g14258' => 'bca', 'BcaB07g32160' => 'bca', 'BcaB07g32627' => 'bca', 'BcaB07g32634' => 'bca', 'BcaC01g00181' => 'bca', 'BcaC01g00680' => 'bca', 'BcaC05g26084' => 'bca', 'BcaC05g27057' => 'bca', 'BcaC06g34899' => 'bca', 'BcaC06g35499' => 'bca', 'BcaC08g44790' => 'bca', 'BcaC08g46974' => 'bca', 'BcaC08g47363' => 'bca', 'BcaC08g47617' => 'bca', 'BcaNung00726' => 'bca', 'BcaNung00727' => 'bca', 'BcaNung00780' => 'bca', 'BcaNung05313' => 'bca', 'BolC1t00244H' => 'bol', 'BolC1t00295H' => 'bol', 'BolC2t11146H' => 'bol', 'BolC3t19921H' => 'bol', 'BolC3t20585H' => 'bol', 'BolC5t30762H' => 'bol', 'BolC5t31645H' => 'bol', 'BolC6t37531H' => 'bol', 'BolC6t38406H' => 'bol', 'BolC6t39945H' => 'bol', 'BolC6t39967H' => 'bol', 'BolC6t40168H' => 'bol', 'BolC7t42030H' => 'bol', 'BolC7t42732H' => 'bol', 'BraA01t00223Z' => 'bra', 'BraA06t24866Z' => 'bra', 'BraA07t28791Z' => 'bra', 'BraA07t29243Z' => 'bra', 'BraA07t31615Z' => 'bra', 'BraA07t31629Z' => 'bra', 'BraA07t31809Z' => 'bra', 'BraA08t33478Z' => 'bra', 'BraA08t34410Z' => 'bra', 'BraA09t39148Z' => 'bra', 'C01p02560' => 'bna', 'C01p03100' => 'bna', 'C03p76620' => 'bna', 'C03p83050' => 'bna', 'C05p20630' => 'bna', 'C05p29150' => 'bna', 'C06p49110' => 'bna', 'C06p49320' => 'bna', 'C06p51500' => 'bna', 'C07p15270' => 'bna', 'C07p22020' => 'bna', 'CAN.G1126.27' => 'can', 'CAN.G1226.44' => 'can', 'CAN.G1282.4' => 'can', 'CAN.G15.20' => 'can', 'CAN.G15.21' => 'can', 'CAN.G358.56' => 'can', 'CAN.G874.49' => 'can', 'CANSAT01G1586' => 'cansat', 'CANSAT01G2037' => 'cansat', 'CANSAT25G1572' => 'cansat', 'CANSAT25G3880' => 'cansat', 'CANSAT35G1452' => 'cansat', 'CANSAT54G1980' => 'cansat', 'CARHR022010' => 'chi', 'CARHR029670' => 'chi', 'CARHR068420' => 'chi', 'CARHR068660' => 'chi', 'CARHR218090' => 'chi', 'CARHR244830' => 'chi', 'Carub.0001s2109' => 'cru', 'Carub.0001s2851' => 'cru', 'Carub.0002s2188' => 'cru', 'Carub.0002s2215' => 'cru', 'Carub.0002s2425' => 'cru', 'Carub.0005s0489' => 'cru', 'Carub.0007s0381' => 'cru', 'Carub.0007s3004' => 'cru', 'Carub.0007s3005' => 'cru', 'Ca_02598_v3' => 'car', 'Ca_15523_v3' => 'car', 'Ca_16601_v3' => 'car', 'Ca_16988_v3' => 'car', 'Ca_17620_v3' => 'car', 'Ca_18052_v3' => 'car', 'Ca_18161_v3' => 'car', 'Ca_22292_v3' => 'car', 'Ca_22322_v3' => 'car', 'CBR_g29816' => 'cbr', 'Cc01_g15750' => 'ccan', 'Cc03_g08810' => 'ccan', 'Cc07_g09800' => 'ccan', 'Cc10_g02610' => 'ccan', 'Cc10_g03210' => 'ccan', 'Cc10_g12530' => 'ccan', 'Cc10_g12540' => 'ccan', 'CDE01G0016' => 'cde', 'CDE01G0044' => 'cde', 'CDE02G0202' => 'cde', 'CDE02G4478' => 'cde', 'CDE05G1731' => 'cde', 'CDE06G0066' => 'cde', 'CDE06G0739' => 'cde', 'CDE06G2822' => 'cde', 'CDE08G0327' => 'cde', 'CDE08G0640' => 'cde', 'Cfa000902' => 'cfa', 'Cfa002194' => 'cfa', 'Cfa013853' => 'cfa', 'Cfa018113' => 'cfa', 'Cfa018430' => 'cfa', 'Cfa023756' => 'cfa', 'Ciclev10000038m.g' => 'ccl', 'Ciclev10000407m.g' => 'ccl', 'Ciclev10000812m.g' => 'ccl', 'Ciclev10014131m.g' => 'ccl', 'Ciclev10015036m.g' => 'ccl', 'Ciclev10024708m.g' => 'ccl', 'CiPaw.01G044200' => 'cil', 'CiPaw.02G019900' => 'cil', 'CiPaw.03G117500' => 'cil', 'CiPaw.04G078900' => 'cil', 'CiPaw.07G159400' => 'cil', 'CiPaw.08G059400' => 'cil', 'CiPaw.09G119900' => 'cil', 'CiPaw.15G032800' => 'cil', 'CiPaw.15G033000' => 'cil', 'CiPaw.15G074300' => 'cil', 'CiPaw.16G024400' => 'cil', 'CiPaw.16G054700' => 'cil', 'ClCG01G019710' => 'cla', 'ClCG01G024870' => 'cla', 'ClCG03G006510' => 'cla', 'ClCG04G001900' => 'cla', 'ClCG05G018830' => 'cla', 'ClCG08G005970' => 'cla', 'COL.COLO4_06774' => 'col', 'COL.COLO4_19725' => 'col', 'COL.COLO4_22044' => 'col', 'COL.COLO4_26278' => 'col', 'COL.COLO4_26354' => 'col', 'COL.COLO4_31012' => 'col', 'Cpa.g.sc17.48' => 'cpa', 'Cpa.g.sc6.145' => 'cpa', 'Cpa.g.sc6.146' => 'cpa', 'Cpa.g.sc64.141' => 'cpa', 'Cpa.g.sc64.62' => 'cpa', 'Cpa.g.sc8.13' => 'cpa', 'Cre12.g511650' => 'cre', 'CsaV3_1G036840' => 'csa', 'CsaV3_3G044920' => 'csa', 'CsaV3_3G045340' => 'csa', 'CsaV3_4G030730' => 'csa', 'CsaV3_5G010930' => 'csa', 'CsaV3_6G034110' => 'csa', 'CsaV3_6G046420' => 'csa', 'CsaV3_6G051990' => 'csa', 'CSS0000302' => 'camsi', 'CSS0002999' => 'camsi', 'CSS0008591' => 'camsi', 'CSS0009447' => 'camsi', 'CSS0010304' => 'camsi', 'CSS0012933' => 'camsi', 'CSS0018381' => 'camsi', 'CSS0022253' => 'camsi', 'CSS0023255' => 'camsi', 'CSS0032437' => 'camsi', 'CSS0033645' => 'camsi', 'CSS0033916' => 'camsi', 'CSS0034876' => 'camsi', 'CSS0035707' => 'camsi', 'CSS0040566' => 'camsi', 'CSS0044604' => 'camsi', 'CSS0045130' => 'camsi', 'CSS0045735' => 'camsi', 'DCAR_003893' => 'dca', 'DCAR_003894' => 'dca', 'DCAR_004817' => 'dca', 'DCAR_010050' => 'dca', 'DCAR_013831' => 'dca', 'DCAR_014375' => 'dca', 'DCAR_018601' => 'dca', 'DCAR_019514' => 'dca', 'DCAR_022471' => 'dca', 'DCAR_022575' => 'dca', 'DCAR_025958' => 'dca', 'Dinv02952' => 'din', 'Dinv13499' => 'din', 'Dinv14665' => 'din', 'Dinv21525' => 'din', 'Dinv27275' => 'din', 'Dinv28774' => 'din', 'Dinv28775' => 'din', 'Dinv30349' => 'din', 'Dinv32215' => 'din', 'Dinv36052' => 'din', 'Dinv36053' => 'din', 'Dinv36106' => 'din', 'Dinv36107' => 'din', 'Dinv39395' => 'din', 'Dinv40006' => 'din', 'Duzib041G0764' => 'dzi', 'Duzib093G0378' => 'dzi', 'Duzib093G1661' => 'dzi', 'Duzib116G0669' => 'dzi', 'Duzib116G0813' => 'dzi', 'Duzib116G0941' => 'dzi', 'Duzib133G1123' => 'dzi', 'Duzib138G1676' => 'dzi', 'Duzib147G0259' => 'dzi', 'Duzib160G0084' => 'dzi', 'Duzib187G1890' => 'dzi', 'Duzib192G0574' => 'dzi', 'Duzib235G0761' => 'dzi', 'Duzib264G0369' => 'dzi', 'ECA232G2814' => 'eca', 'ECA236G3811' => 'eca', 'ECA236G4706' => 'eca', 'ECA246G1441' => 'eca', 'ECA246G3280' => 'eca', 'ECA246G3494' => 'eca', 'ECA248G2142' => 'eca', 'EL10Ac1g01338' => 'bvu', 'EL10Ac1g01838' => 'bvu', 'EL10Ac1g02085' => 'bvu', 'EL10Ac4g08635' => 'bvu', 'EL10Ac6g13616' => 'bvu', 'EL10Ac6g14079' => 'bvu', 'EL10Ac8g19628' => 'bvu', 'Eucgr.D00271' => 'egr', 'Eucgr.E01009' => 'egr', 'Eucgr.F01546' => 'egr', 'Eucgr.F01587' => 'egr', 'Eucgr.F01588' => 'egr', 'Eucgr.H03319' => 'egr', 'Eucgr.H05116' => 'egr', 'Eucgr.I00114' => 'egr', 'FAN11G1753' => 'fan', 'FAN15G1098' => 'fan', 'FAN15G1967' => 'fan', 'FAN15G2375' => 'fan', 'FAN16G3061' => 'fan', 'FAN19G0391' => 'fan', 'FAN19G0720' => 'fan', 'FAN20G0050' => 'fan', 'FAN20G1211' => 'fan', 'FAN20G2499' => 'fan', 'FAN21G0939' => 'fan', 'FAN23G2045' => 'fan', 'FAN23G2793' => 'fan', 'FAN24G3040' => 'fan', 'FAN25G3819' => 'fan', 'FAN26G1406' => 'fan', 'FAN26G2377' => 'fan', 'FAN27G0862' => 'fan', 'FAN27G1473' => 'fan', 'FAN27G3485' => 'fan', 'FAN28G1818' => 'fan', 'FAN28G2452' => 'fan', 'FvH4_1g12901' => 'fve', 'FvH4_1g25040' => 'fve', 'FvH4_2g27690' => 'fve', 'FvH4_2g39550' => 'fve', 'FvH4_2g40090' => 'fve', 'FvH4_3g05060' => 'fve', 'Glyma.01G061700' => 'gma', 'Glyma.01G172200' => 'gma', 'Glyma.02G055100' => 'gma', 'Glyma.02G120000' => 'gma', 'Glyma.04G033500' => 'gma', 'Glyma.04G209400' => 'gma', 'Glyma.04G246200' => 'gma', 'Glyma.05G143200' => 'gma', 'Glyma.05G194500' => 'gma', 'Glyma.06G033700' => 'gma', 'Glyma.06G116500' => 'gma', 'Glyma.06G156500' => 'gma', 'Glyma.06G207701' => 'gma', 'Glyma.08G002300' => 'gma', 'Glyma.08G099600' => 'gma', 'Glyma.08G231500' => 'gma', 'Glyma.09G089500' => 'gma', 'Glyma.11G071000' => 'gma', 'Glyma.15G197100' => 'gma', 'Glyma.16G137800' => 'gma', 'Glyma.20G040300' => 'gma', 'Gohir.1Z050099' => 'ghi', 'Gohir.A01G117000' => 'ghi', 'Gohir.A02G109900' => 'ghi', 'Gohir.A02G166900' => 'ghi', 'Gohir.A05G146400' => 'ghi', 'Gohir.A05G195900' => 'ghi', 'Gohir.A06G008800' => 'ghi', 'Gohir.A06G008850' => 'ghi', 'Gohir.A06G011400' => 'ghi', 'Gohir.A06G196200' => 'ghi', 'Gohir.A07G162300' => 'ghi', 'Gohir.A07G194800' => 'ghi', 'Gohir.A11G145800' => 'ghi', 'Gohir.D01G105500' => 'ghi', 'Gohir.D03G013100' => 'ghi', 'Gohir.D03G069300' => 'ghi', 'Gohir.D05G148800' => 'ghi', 'Gohir.D05G199000' => 'ghi', 'Gohir.D06G004400' => 'ghi', 'Gohir.D06G008800' => 'ghi', 'Gohir.D06G203700' => 'ghi', 'Gohir.D07G168800' => 'ghi', 'Gohir.D07G201200' => 'ghi', 'Gohir.D11G151800' => 'ghi', 'Gohir.D11G189600' => 'ghi', 'Gorai.001G225900' => 'gra', 'Gorai.002G129400' => 'gra', 'Gorai.003G013400' => 'gra', 'Gorai.007G162500' => 'gra', 'Gorai.007G201800' => 'gra', 'Gorai.009G152900' => 'gra', 'Gorai.009G204200' => 'gra', 'Gorai.010G009000' => 'gra', 'Gorai.010G011600' => 'gra', 'Gorai.010G237600' => 'gra', 'Gorai.013G109400' => 'gra', 'Gorai.N000800' => 'gra', 'GSVIVG01001746001' => 'vvi', 'GSVIVG01003368001' => 'vvi', 'GSVIVG01003372001' => 'vvi', 'GSVIVG01003377001' => 'vvi', 'GSVIVG01005634001' => 'vvi', 'GSVIVG01008817001' => 'vvi', 'GSVIVG01008818001' => 'vvi', 'GSVIVG01009663001' => 'vvi', 'GSVIVG01009738001' => 'vvi', 'GSVIVG01018928001' => 'vvi', 'GSVIVG01021545001' => 'vvi', 'GSVIVG01022322001' => 'vvi', 'GSVIVG01022323001' => 'vvi', 'GSVIVG01022327001' => 'vvi', 'GSVIVG01026693001' => 'vvi', 'HanXRQChr01g0013781' => 'han', 'HanXRQChr03g0078481' => 'han', 'HanXRQChr04g0116591' => 'han', 'HanXRQChr05g0151771' => 'han', 'HanXRQChr06g0182461' => 'han', 'HanXRQChr07g0197331' => 'han', 'HanXRQChr08g0226251' => 'han', 'HanXRQChr09g0268551' => 'han', 'HanXRQChr09g0268991' => 'han', 'HanXRQChr16g0501511' => 'han', 'HanXRQChr16g0508381' => 'han', 'HanXRQChr16g0508581' => 'han', 'HanXRQChr16g0530651' => 'han', 'Haze_05659' => 'cav', 'Haze_05667' => 'cav', 'Haze_15065' => 'cav', 'Haze_17633' => 'cav', 'Haze_18002' => 'cav', 'Haze_22526' => 'cav', 'Haze_24050' => 'cav', 'Haze_25367' => 'cav', 'Hma1.2p1_0542F.1_g175130' => 'hma', 'Hma1.2p1_0594F.1_g185990' => 'hma', 'Hma1.2p1_0834F.1_g225750' => 'hma', 'Hma1.2p1_1756F.1_g301040' => 'hma', 'HPP92_008317' => 'vpl', 'HPP92_010677' => 'vpl', 'HPP92_010701' => 'vpl', 'HPP92_010703' => 'vpl', 'HPP92_023422' => 'vpl', 'HPP92_024903' => 'vpl', 'HPP92_024904' => 'vpl', 'Hund01748' => 'sun', 'Hund05122' => 'sun', 'Hund07228' => 'sun', 'Hund13995' => 'sun', 'Hund17319' => 'sun', 'Hund17650' => 'sun', 'Hund21551' => 'sun', 'Lalb_Chr07g0187501' => 'lal', 'Lalb_Chr08g0238141' => 'lal', 'Lalb_Chr08g0245821' => 'lal', 'Lalb_Chr08g0245831' => 'lal', 'Lalb_Chr11g0066151' => 'lal', 'Lalb_Chr11g0068671' => 'lal', 'Lalb_Chr12g0203011' => 'lal', 'Lalb_Chr14g0369391' => 'lal', 'Lalb_Chr16g0391071' => 'lal', 'Lalb_Chr23g0271151' => 'lal', 'Lalb_Chr23g0272701' => 'lal', 'Lalb_Chr23g0275921' => 'lal', 'Lj1A108T44' => 'lonja', 'Lj1g0006269' => 'lja', 'Lj1g0012117' => 'lja', 'Lj1g0012266' => 'lja', 'Lj2A1109T72' => 'lonja', 'Lj2A1109T73' => 'lonja', 'Lj2A456T55' => 'lonja', 'Lj2C322G11' => 'lonja', 'Lj2g0024909' => 'lja', 'Lj4A37G88' => 'lonja', 'Lj4A43T54' => 'lonja', 'Lj4A684G33' => 'lonja', 'Lj4A783G82' => 'lonja', 'Lj4g0003152' => 'lja', 'Lj4g0015326' => 'lja', 'Lj4g0022235' => 'lja', 'Lj5g0013653' => 'lja', 'Lj5g0018160' => 'lja', 'Lj6g0026443' => 'lja', 'Lsat_1_v5_gn_2_53120' => 'lsa', 'Lsat_1_v5_gn_3_75961' => 'lsa', 'Lsat_1_v5_gn_4_103040' => 'lsa', 'Lsat_1_v5_gn_4_117700' => 'lsa', 'Lsat_1_v5_gn_4_121781' => 'lsa', 'Lsat_1_v5_gn_5_175680' => 'lsa', 'Lsat_1_v5_gn_5_27361' => 'lsa', 'Lsat_1_v5_gn_6_109140' => 'lsa', 'Lsat_1_v5_gn_7_27500' => 'lsa', 'Lsat_1_v5_gn_8_98661' => 'lsa', 'Lsat_1_v5_gn_9_15761' => 'lsa', 'Manes.01G137600' => 'mes', 'Manes.02G096000' => 'mes', 'Manes.02G167200' => 'mes', 'Manes.05G157300' => 'mes', 'Manes.05G162500' => 'mes', 'Manes.12G058900' => 'mes', 'Manes.13G058000' => 'mes', 'Manes.15G124900' => 'mes', 'Manes.17G074100' => 'mes', 'Manes.18G022400' => 'mes', 'Manes.18G029100' => 'mes', 'Mapoly0038s0006' => 'mpo', 'Mapoly0085s0031' => 'mpo', 'Mapoly0097s0028' => 'mpo', 'MBI06_g35203_MAGBIO' => 'mbi', 'MBI10_g06732_MAGBIO' => 'mbi', 'MBI16_g08806_MAGBIO' => 'mbi', 'MBI16_g43107_MAGBIO' => 'mbi', 'MBI18_g11222_MAGBIO' => 'mbi', 'MCO01G759' => 'mco', 'MD00G1063400' => 'mdo', 'MD00G1129800' => 'mdo', 'MD00G1181300' => 'mdo', 'MD05G1279900' => 'mdo', 'MD08G1028800' => 'mdo', 'MD08G1032500' => 'mdo', 'MD10G1258400' => 'mdo', 'MD15G1024300' => 'mdo', 'MD15G1029200' => 'mdo', 'MD15G1135900' => 'mdo', 'MD15G1257500' => 'mdo', 'MD15G1257600' => 'mdo', 'Medtr1g022415' => 'mtr', 'Medtr2g049770' => 'mtr', 'Medtr3g088495' => 'mtr', 'Medtr3g096790' => 'mtr', 'Medtr3g111700' => 'mtr', 'Medtr3g116155' => 'mtr', 'Medtr6g038630' => 'mtr', 'Medtr8g077150' => 'mtr', 'Medtr8g079472' => 'mtr', 'Medtr8g094000' => 'mtr', 'Medtr8g494210' => 'mtr', 'MELO3C002769.2' => 'cme', 'MELO3C003815.2' => 'cme', 'MELO3C003878.2' => 'cme', 'MELO3C007108.2' => 'cme', 'MELO3C007839.2' => 'cme', 'MELO3C008941.2' => 'cme', 'MELO3C010649.2' => 'cme', 'Migut.C00697' => 'egut', 'Migut.C01057' => 'egut', 'Migut.C01058' => 'egut', 'Migut.D00759' => 'egut', 'Migut.H01348' => 'egut', 'Migut.J00612' => 'egut', 'Migut.L00023' => 'egut', 'Migut.M00882' => 'egut', 'Migut.N00485' => 'egut', 'Migut.N00693' => 'egut', 'Migut.N03267' => 'egut', 'MSTRG.12730' => 'ama', 'MSTRG.1416' => 'ama', 'MSTRG.14786' => 'ama', 'MSTRG.16264' => 'ama', 'MSTRG.17944' => 'ama', 'MSTRG.22306' => 'ama', 'MSTRG.25152' => 'ama', 'MSTRG.25187' => 'ama', 'MSTRG.3836' => 'ama', 'MSTRG.7510' => 'ama', 'Nitab4.5_0000110g0410' => 'nta', 'Nitab4.5_0000178g0290' => 'nta', 'Nitab4.5_0000322g0020' => 'nta', 'Nitab4.5_0001348g0210' => 'nta', 'Nitab4.5_0001930g0030' => 'nta', 'Nitab4.5_0003246g0080' => 'nta', 'Nitab4.5_0003265g0130' => 'nta', 'Nitab4.5_0004752g0010' => 'nta', 'Nitab4.5_0006722g0020' => 'nta', 'Nitab4.5_0007490g0010' => 'nta', 'Nitab4.5_0008031g0010' => 'nta', 'Nitab4.5_0010771g0020' => 'nta', 'Nitab4.5_0011643g0010' => 'nta', 'Nitab4.5_0012925g0010' => 'nta', 'Nn1g04932' => 'nnu', 'Nn1g08903' => 'nnu', 'Nn3g20338' => 'nnu', 'Nn4g26634' => 'nnu', 'Nn5g28425' => 'nnu', 'Nn5g29524' => 'nnu', 'Nn5g29660' => 'nnu', 'Oeu001533.5' => 'oeu', 'Oeu016737.2' => 'oeu', 'Oeu019074.1' => 'oeu', 'Oeu030358.1' => 'oeu', 'Oeu030429.1' => 'oeu', 'Oeu030961.1' => 'oeu', 'Oeu050160.1' => 'oeu', 'Oeu055306.1' => 'oeu', 'Oeu063198.2' => 'oeu', 'Oeu063614.1' => 'oeu', 'Os01g0355500' => 'osa', 'Os01g0634300' => 'osa', 'Os03g0198300' => 'osa', 'Os05g0579900' => 'osa', 'Os11g0661200' => 'osa', 'Os12g0548200' => 'osa', 'Peaxi162Scf00051g00193' => 'pax', 'Peaxi162Scf00057g00427' => 'pax', 'Peaxi162Scf00140g00022' => 'pax', 'Peaxi162Scf00366g00623' => 'pax', 'Peaxi162Scf00390g00124' => 'pax', 'Peaxi162Scf00424g00069' => 'pax', 'Peaxi162Scf00465g00819' => 'pax', 'PGR044G1332' => 'pgr', 'PGR083G0061' => 'pgr', 'PGR083G0357' => 'pgr', 'PGR083G1237' => 'pgr', 'PGR083G2524' => 'pgr', 'PGR102G1850' => 'pgr', 'PGR102G3254' => 'pgr', 'PGR119G0887' => 'pgr', 'PGSC0003DMG400003516' => 'stu', 'PGSC0003DMG400003694' => 'stu', 'PGSC0003DMG400011780' => 'stu', 'PGSC0003DMG401020301' => 'stu', 'PGSC0003DMG401027859' => 'stu', 'PGSC0003DMG402020301' => 'stu', 'PGSC0003DMG402027680' => 'stu', 'PGSC0003DMG402027859' => 'stu', 'Phvul.001G012900' => 'pvu', 'Phvul.002G032500' => 'pvu', 'Phvul.002G178100' => 'pvu', 'Phvul.002G274800' => 'pvu', 'Phvul.003G255200' => 'pvu', 'Phvul.009G056700' => 'pvu', 'Phvul.009G128700' => 'pvu', 'Phvul.009G153800' => 'pvu', 'Phvul.009G213200' => 'pvu', 'Potri.002G033800' => 'ptr', 'Potri.002G079200' => 'ptr', 'Potri.002G134300' => 'ptr', 'Potri.002G217200' => 'ptr', 'Potri.004G133100' => 'ptr', 'Potri.005G120700' => 'ptr', 'Potri.005G181700' => 'ptr', 'Potri.005G229300' => 'ptr', 'Potri.007G022600' => 'ptr', 'Potri.011G081500' => 'ptr', 'Potri.014G042600' => 'ptr', 'Potri.014G197600' => 'ptr', 'Pp3c20_2140' => 'ppa', 'Pp3c23_17930' => 'ppa', 'Pp3c2_20530' => 'ppa', 'Pp3c2_21760' => 'ppa', 'Pp3c9_21710' => 'ppa', 'Prupe.1G376600' => 'ppe', 'Prupe.1G382200' => 'ppe', 'Prupe.1G490900' => 'ppe', 'Prupe.4G085400' => 'ppe', 'Prupe.4G277600' => 'ppe', 'Prupe.7G157600' => 'ppe', 'Psat1g020720' => 'psa', 'Psat1g117600' => 'psa', 'Psat1g117640' => 'psa', 'Psat4g094640' => 'psa', 'Psat4g101480' => 'psa', 'Psat4g101520' => 'psa', 'Psat5g018880' => 'psa', 'Psat5g059240' => 'psa', 'Psat5g080760' => 'psa', 'Psat6g009160' => 'psa', 'Psat7g045320' => 'psa', 'Psat7g080520' => 'psa', 'PSO170G1978' => 'pso', 'PSO170G3223' => 'pso', 'PSO528G0122' => 'pso', 'PSO541G5001' => 'pso', 'PSO675G7500' => 'pso', 'PSO675G8496' => 'pso', 'PSO700G0331' => 'pso', 'QL01p055674' => 'qlo', 'QL02p007759' => 'qlo', 'QL02p009195' => 'qlo', 'QL02p091472' => 'qlo', 'QL05p055155' => 'qlo', 'QL06p047072' => 'qlo', 'QL09p032974' => 'qlo', 'QL10p040957' => 'qlo', 'QL10p040983' => 'qlo', 'RcHm_v2.0_Chr2g0100991' => 'rch', 'RcHm_v2.0_Chr2g0122701' => 'rch', 'RcHm_v2.0_Chr5g0014901' => 'rch', 'RcHm_v2.0_Chr6g0296551' => 'rch', 'RcHm_v2.0_Chr6g0300651' => 'rch', 'RcHm_v2.0_Chr6g0301361' => 'rch', 'Rhsim01G0246300' => 'rsi', 'Rhsim06G0035600' => 'rsi', 'Rhsim10G0124300' => 'rsi', 'Rhsim11G0070500' => 'rsi', 'Rhsim13G0056100' => 'rsi', 'Rhsim13G0117200' => 'rsi', 'Sabra02G0027100' => 'sbr', 'Sabra02G0062000' => 'sbr', 'Sabra02G0104700' => 'sbr', 'Sabra02G0168800' => 'sbr', 'Sabra04G0085000' => 'sbr', 'Sabra05G0099500' => 'sbr', 'Sabra05G0137600' => 'sbr', 'Sabra05G0137700' => 'sbr', 'Sabra07G0019700' => 'sbr', 'Sabra11G0065100' => 'sbr', 'Sabra11G0065200' => 'sbr', 'Sabra14G0030900' => 'sbr', 'Sabra14G0132800' => 'sbr', 'SalBow2G0699' => 'sbo', 'SalBow2G1758' => 'sbo', 'SalBow2G2765' => 'sbo', 'SalBow6G2307' => 'sbo', 'SalBow7G2185' => 'sbo', 'SalBow7G2988' => 'sbo', 'SalBow7G4302' => 'sbo', 'SalBow7G4484' => 'sbo', 'SalBow8G1099' => 'sbo', 'SalBow8G1363' => 'sbo', 'SalBow8G3181' => 'sbo', 'SalBow8G3663' => 'sbo', 'Sc02g0005090' => 'sci', 'Sc02g0005920' => 'sci', 'Sc03g0003100' => 'sci', 'Sc06g0005390' => 'sci', 'Sc09g0002090' => 'sci', 'Sc15g0006820' => 'sci', 'Sc16g0002620' => 'sci', 'Sc17g0004800' => 'sci', 'Sed0004263' => 'sed', 'Sed0010534' => 'sed', 'Sed0010746' => 'sed', 'Sed0011324' => 'sed', 'Sed0014179' => 'sed', 'Sed0018731' => 'sed', 'Sed0022218' => 'sed', 'Sed0023790' => 'sed', 'Sed0026766' => 'sed', 'Sed0027919' => 'sed', 'SEGI_10640' => 'sgi', 'SEGI_13963' => 'sgi', 'SGA_v2.0_scaffold100G29627' => 'sas', 'SGA_v2.0_scaffold106G30658' => 'sas', 'SGA_v2.0_scaffold11G05818' => 'sas', 'SGA_v2.0_scaffold120G33018' => 'sas', 'SGA_v2.0_scaffold223G42823' => 'sas', 'SGA_v2.0_scaffold24G10432' => 'sas', 'SGA_v2.0_scaffold28G11978' => 'sas', 'SGA_v2.0_scaffold2G01104' => 'sas', 'SGA_v2.0_scaffold328G48804' => 'sas', 'SGA_v2.0_scaffold47G17644' => 'sas', 'SGA_v2.0_scaffold47G17646' => 'sas', 'SGA_v2.0_scaffold48G18064' => 'sas', 'SGA_v2.0_scaffold77G25329' => 'sas', 'SHI09192' => 'shi', 'SHI09197' => 'shi', 'SMO169G0053' => 'smo', 'SMO239G0087' => 'smo', 'SMO337G0016' => 'smo', 'SMO340G0065' => 'smo', 'Solyc02g085030.4' => 'sly', 'Solyc04g080040.3' => 'sly', 'Solyc04g080600.3' => 'sly', 'Solyc06g060090.3' => 'sly', 'Solyc06g082840.4' => 'sly', 'Solyc09g018960.4' => 'sly', 'Sopen02g029730' => 'spe', 'Sopen04g033630' => 'spe', 'Sopen04g034190' => 'spe', 'Sopen06g020200' => 'spe', 'Sopen06g034200' => 'spe', 'Sopen09g012690' => 'spe', 'Sp1g19200' => 'spa', 'Sp1g26120' => 'spa', 'Sp5g30230' => 'spa', 'Sp5g30460' => 'spa', 'Sp7g09210' => 'spa', 'Sp7g09310' => 'spa', 'Sp7g34170' => 'spa', 'SpUn2041_0010' => 'spa', 'TAR376G0269' => 'tar', 'TAR376G0306' => 'tar', 'TAR381G1253' => 'tar', 'TAR625G1032' => 'tar', 'TAR626G1770' => 'tar', 'TAR628G0252' => 'tar', 'TAR628G0949' => 'tar', 'TAR628G1328' => 'tar', 'TAR629G2522' => 'tar', 'TAR704G0001' => 'tar', 'THA.LOC104802636' => 'tha', 'THA.LOC104804238' => 'tha', 'THA.LOC104808004' => 'tha', 'THA.LOC104808822' => 'tha', 'THA.LOC104810253' => 'tha', 'THA.LOC104811377' => 'tha', 'THA.LOC104813676' => 'tha', 'THA.LOC104814311' => 'tha', 'THA.LOC104815376' => 'tha', 'THA.LOC104820189' => 'tha', 'THA.LOC104820660' => 'tha', 'THA.LOC104821890' => 'tha', 'THA.LOC104824510' => 'tha', 'Thecc.01G032000' => 'tca', 'Thecc.01G204100' => 'tca', 'Thecc.06G144600' => 'tca', 'Thecc.08G023300' => 'tca', 'Thecc.08G030300' => 'tca', 'Thecc.08G131800' => 'tca', 'Thhalv10007304m.g' => 'esa', 'Thhalv10007605m.g' => 'esa', 'Thhalv10018007m.g' => 'esa', 'Thhalv10018263m.g' => 'esa', 'Thhalv10024218m.g' => 'esa', 'Thhalv10024354m.g' => 'esa', 'Thhalv10024361m.g' => 'esa', 'Thhalv10026956m.g' => 'esa', 'TPR.G12405' => 'tpr', 'TPR.G13481' => 'tpr', 'TPR.G20156' => 'tpr', 'TPR.G24117' => 'tpr', 'TPR.G31226' => 'tpr', 'TPR.G33561' => 'tpr', 'TPR.G37379' => 'tpr', 'TPR.G9564' => 'tpr', 'TWI09G0793' => 'twi', 'TWI09G0936' => 'twi', 'TWI12G1346' => 'twi', 'TWI18G0909' => 'twi', 'TWI32G0027' => 'twi', 'TWI36G0254' => 'twi', 'TWI36G1344' => 'twi', 'TWI36G1469' => 'twi', 'TWI73G0600' => 'twi', 'TWI73G1040' => 'twi', 'TWI75G0543' => 'twi', 'unitig_0.g426' => 'ugi', 'unitig_37.g12090' => 'ugi', 'unitig_37.g12964' => 'ugi', 'unitig_578.g16075' => 'ugi', 'unitig_749.g13844' => 'ugi', 'unitig_8.g3350' => 'ugi', 'unitig_8.g4931' => 'ugi', 'unitig_88.g27755' => 'ugi', 'vmacro00857' => 'vma', 'vmacro02849' => 'vma', 'vmacro03434' => 'vma', 'vmacro12740' => 'vma', 'vmacro14671' => 'vma', 'vmacro21623' => 'vma', 'vmacro21661' => 'vma', 'VMungo0251G0171' => 'vmu', 'VMungo0251G0936' => 'vmu', 'VMungo0251G1602' => 'vmu', 'VMungo0647G1350' => 'vmu', 'VMungo0681G0003' => 'vmu', 'VMungo1215G2269' => 'vmu', 'VMungo1309G1033' => 'vmu', 'VMungo1309G1421' => 'vmu', 'VMungo1309G1506' => 'vmu', 'VMungo1309G2141' => 'vmu', 'Zm00001eb049390' => 'zma', 'Zm00001eb115800' => 'zma', 'Zm00001eb117490' => 'zma', 'Zm00001eb131530' => 'zma', 'Zm00001eb137290' => 'zma', 'Zm00001eb159010' => 'zma', 'Zm00001eb296870' => 'zma', 'Zm00001eb400990' => 'zma', 'Zm00001eb410220' => 'zma' ) $gf_id = 'HOM05D000625' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000625' ) $data_identifier = 'HOM05D000625' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 21, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 19, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 7, 'arhy' => (int) 19, 'ath' => (int) 7, 'atr' => (int) 7, 'acertr' => (int) 9, 'cqu' => (int) 12, 'bca' => (int) 23, 'bol' => (int) 14, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 6, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 9, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 10, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 12, 'cla' => (int) 6, 'col' => (int) 6, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 8, 'camsi' => (int) 18, 'dca' => (int) 11, 'din' => (int) 15, 'dzi' => (int) 14, 'eca' => (int) 7, 'bvu' => (int) 7, 'egr' => (int) 8, 'fan' => (int) 22, 'fve' => (int) 6, 'gma' => (int) 21, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 15, 'han' => (int) 13, 'cav' => (int) 8, 'hma' => (int) 4, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 12, 'lonja' => (int) 9, 'lja' => (int) 10, 'lsa' => (int) 11, 'mes' => (int) 11, 'mpo' => (int) 3, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 12, 'mtr' => (int) 11, 'cme' => (int) 7, 'egut' => (int) 11, 'ama' => (int) 10, 'nta' => (int) 14, 'nnu' => (int) 7, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 7, 'pgr' => (int) 8, 'stu' => (int) 8, 'pvu' => (int) 9, 'ptr' => (int) 12, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 9, 'rch' => (int) 6, 'rsi' => (int) 6, 'sbr' => (int) 13, 'sbo' => (int) 12, 'sci' => (int) 8, 'sed' => (int) 10, 'sgi' => (int) 2, 'sas' => (int) 13, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 13, 'tca' => (int) 6, 'esa' => (int) 8, 'tpr' => (int) 8, 'twi' => (int) 11, 'ugi' => (int) 8, 'vma' => (int) 7, 'vmu' => (int) 10, 'zma' => (int) 9 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb410220' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1